The differential in the volume of (allegedly) 6-gallon carboys could be part of the issue - of my five 6-gal carboy, three are glass and two are plastic (Better Bottle), and I know the plastic ones hold about ~.5 L less than the glass, so I try to rack to a glass carboy from the primary (if available) and then later rack to the plastic carboy as the reduced sediment seems to coordinate with the reduced volume.
The logic is ok on both - the fermentation process will be the same for virtually all your kit wines. And yes, the fermenting must at the secondary stage is still generating a 'blanket' of gasses that will slow, if not prevent, oxidation, but not as much as the earlier fermentation stage. Also, keep in mind that oxidation is a slow process - it doesn't happen in one or two days in a not-fully-topped-off carboy, but over weeks or months. And the presence of some oxygen in the carboy is essential - that's what keeps the yeast going in the secondary stage. But the CC folks are a little more anxious about kit winemakers not keeping the air volume at the top to a minimum than the RJS folks, would be my guess. I agree that adding a finished wine to a fermenting wine is not ideal at this stage, but it would accomplish what CC is aiming at.
At the risk of beating a dead horse, I would again recommend using glass marbles to make up that differential - IMO, glass marbles are ideal because you can use as many or as few as you need to displace that air at the top. Since each wine is a little different, there is no 'perfect' set of carboy sizes to have on hand, but enough marbles can make a 1-gal jug into a .5 L jug, if need be.